PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00017098-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 570aa    MW: 66051 Da    PI: 8.5389
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00017098-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.71e-1437128191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleH 85 
                            kfY++YAk +GF+vr+ ++ +  ++g++ ++   C+++g  + ++ + + + +t++   t+Cka+ + +      +g +++ ++++ H
  SMil_00017098-RA_Salv  37 KFYKKYAKACGFQVRMGTKDRA-KDGTVRMQYALCNRQGVWAYTDAS-RINPHTKKRRTTSCKANCMARAIFqvtTGGYYIRTFNEGH 122
                            6*****************9998.77779999999******9999998.44444444455555555444444333499*********** PP

                   FAR1  86 nHelap 91 
                            +H+++p
  SMil_00017098-RA_Salv 123 SHSMVP 128
                            **9975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-1237128IPR004330FAR1 DNA binding domain
PfamPF105512.1E-28249340IPR018289MULE transposase domain
PROSITE profilePS5096610.138413449IPR007527Zinc finger, SWIM-type
PfamPF044346.2E-4420441IPR007527Zinc finger, SWIM-type
SMARTSM005750.0036424451IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MADDSSSSIA KLCFPKVEDS RRPHTGQMFA NLHDGVKFYK KYAKACGFQV RMGTKDRAKD  60
GTVRMQYALC NRQGVWAYTD ASRINPHTKK RRTTSCKANC MARAIFQVTT GGYYIRTFNE  120
GHSHSMVPGP SQHFMPANRN VGEIQQMLIM SGIKANIGPM RTFRMVREMV GSYKGVGCTS  180
TDFKNYVRDL KVYNKGSDAH MLVEALSNKQ GLGRGFKFFY DEDEDQKLRR LIWADEISIK  240
NFKMFGEAIS FDATYNTNRY KLIFTPFTGR DNHGKCISFG AALISKEDTE SYSWVLDKFV  300
QIMGRAPRLI ITDQDPGLKR AVSSSWKDTR HRYCMWHISM KVAEKVPIRL RDDQDYKSKF  360
EDIIWSDHED PDAFEENWNN MIDEYELSDN RWFSDMFEDR MFWVPAYFRN GEFIVRQTQS  420
EDDLTCTCNL FNRKGYLCRH VFLVIINSQC DKIPQKYISL RWCKFSLLCP GEAQSELHNE  480
YSQDSSNEEF RYFKIVGEII PHIRLNEDLK NQFFADLMEL KNKFSNTDCM EQTSVAKKKR  540
FEEFYGAAST DSPSVTPLDI SRTKSSSVGG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-55FAR1-related sequence 5